Boutique Hotels in San Francisco: Union Square Stays with Design, Dining, and Deals

San Francisco's best boutique hotels: design-led stays near Union Square, Embarcadero, and Nob Hill with dining, pools, and exclusive rates.

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1-50 out of 60
Sort by: high popularity
  • Price: low to high
  • Price: high to low
  • Guest rating: high to low
  • Popularity: high to low
8.4
Great
Map
2.1 km from City Centre1.1 km from Yerba Buena Center For The Arts
Tonga RoomHoneybee ToursAfternoon Tea
  • Only hotel where three cable car lines meet
  • Polynesian-fusion dining at Tonga Room
  • Educational rooftop honeybee tours
FromC$ 263 /nightSelect
8.5
Great
Map
2.1 km from City Centre400 m from Yerba Buena Center For The Arts
Glass-Domed PoolGarden CourtPied Piper Lounge
  • Historic 1909 landmark hotel
  • Signature afternoon tea in Garden Court
  • Indoor pool beneath artistic glass dome
FromC$ 300 /nightSelect
8.6
Great
Map
3.0 km from City Centre300 m from San Francisco Ferry Building
Atrium LobbyRegency ClubEclipse Lounge
  • World's largest atrium lobby
  • Regency Club panoramic bay views
  • Eclipse Lounge cocktails and views
FromC$ 238 /nightSelect
8.5
Great
Peloton BikeRedwood RoomOn-site beehives
  • On-site beehives produce honey for cocktails
  • Historic hotel with iconic Big Chair
  • Redwood Room bar from single redwood tree
FromC$ 206 /nightSelect
9.1
Perfect
Map
2.6 km from City Centre800 m from San Francisco Ferry Building
Sky LoungeOrafo DiningGlass Skybridge
  • Top-floor panoramic Bay views
  • Michelin-starred chef on-site
  • Glass skybridge architecture
FromC$ 579 /nightSelect
8.1
Great
Map
1.4 km from City Centre600 m from Yerba Buena Center For The Arts
Kin KhaoAlcatraz ExhibitEvent Space
  • Michelin-starred restaurant Kin Khao
  • Steps from Union Square & BART
  • Lobby Alcatraz history exhibit
FromC$ 180 /nightSelect
8.4
Great
Map
3.1 km from City Centre400 m from San Francisco Ferry Building
Indoor PoolBike RentalOzumo Restaurant
  • Bay Bridge views from rooms
  • Complimentary wine hour daily
  • YMCA fitness and pool access
FromC$ 215 /nightSelect
8.5
Great
Map
1.5 km from City Centre1000 m from Yerba Buena Center For The Arts
Rooftop TerraceElliott's RestaurantThe Mortimer
  • Historic architecture with modern design
  • Farm-to-table dining at Elliott's
  • Cocktail lounge with live music
FromC$ 194 /nightSelect
8.2
Great
FIT GymTRACE RestaurantBicycle Rental
  • LEED Platinum certified building
  • Signature Whatever/Whenever service
  • Pet-friendly P.A.W. program
FromC$ 224 /nightSelect
7.7
Very good
Executive Lounge750 RestaurantFitness Center
  • Executive lounge with complimentary drinks
  • Award-winning concierge assistance
  • Bay view rooms overlooking landmarks
FromC$ 166 /nightSelect
8.5
Great
Obscenity BarUnderground ConciergeIn-room Typewriter
  • Beat Generation literary theme
  • Complimentary welcome cocktails
  • In-house Obscenity Bar
FromC$ 180 /nightSelect
8.4
Great
Map
1.9 km from City Centre600 m from Yerba Buena Center For The Arts
Grand ClubRooftop GymOneUP Lounge
  • Grand Club with panoramic views
  • Top-floor gym with city views
  • Motorized window shades in rooms
FromC$ 187 /nightSelect
8.8
Great
Map
3.1 km from City Centre300 m from San Francisco Ferry Building
Bamford SpaRooftop TerraceTerrene Restaurant
  • LEED-certified sustainable refuge
  • On-site rooftop garden apiary
  • Bamford holistic spa therapies
FromC$ 527 /nightSelect
8.5
Great
Map
3.6 km from City Centre300 m from Ghirardelli Square
In-Room SpaBlue MermaidBike Rentals
  • Converted 1907 cannery hotel
  • AAA Four Diamond 20+ years
  • On-site National Park museum
FromC$ 190 /nightSelect
8.3
Great
Map
1.4 km from City Centre500 m from The Fillmore
Michelin-Starred RestaurantMeditation GardenWhisky Bar
  • Michelin-starred on-site restaurant
  • Japanese meditation garden
  • Steps from Fillmore Auditorium
FromC$ 195 /nightSelect
8.6
Great
Map
1.5 km from City Centre900 m from Yerba Buena Center For The Arts
Tratto Restaurant24hr FitnessPet Amenities
  • Complimentary evening wine reception
  • Film noir-inspired Art Deco design
  • Historic Beaux-arts building from 1910
FromC$ 156 /nightSelect
8.6
Great
Map
1.9 km from City Centre200 m from Yerba Buena Center For The Arts
Peloton BikesEV ChargingCommune Workspace
  • Floor-to-ceiling city views
  • Chef-driven American-French dining
  • Fitness center with Peloton
FromC$ 204 /nightSelect
8.8
Great
Map
1.5 km from City Centre700 m from Yerba Buena Center For The Arts
Pet TerraceANZU RestaurantGlass-enclosed Pool
  • Japanese-inspired luxury design
  • Rooftop pet terrace
  • Acclaimed ANZU restaurant
FromC$ 250 /nightSelect
8.8
Great
Map
1.5 km from City Centre500 m from Moscone Center
Luce RestaurantIndoor PoolClub Lounge
  • Michelin-starred Luce restaurant
  • Adjacent to Moscone Center
  • Indoor lap pool
FromC$ 277 /nightSelect
8.4
Great
Map
1.5 km from City Centre800 m from The Fillmore
Butterfly LoungeCafe MajesticFitness Center
  • Historic Butterfly Lounge since 1907
  • Clawfoot tubs in vintage rooms
  • Self-paced breakfast experience
FromC$ 169 /nightSelect
7.8
Very good
Map
2.0 km from City Centre800 m from Yerba Buena Center For The Arts
Wine CellarFitness CentreBusiness Centre
  • Wine-themed room decor
  • Daily wine reception social hour
  • Pet-friendly accommodations
FromC$ 114 /nightSelect
9.0
Perfect
Map
2.2 km from City Centre500 m from Yerba Buena Center For The Arts
Rooftop TerracePet AmenitiesFrench Bistro
  • Rooftop terrace with urban garden
  • Pet-friendly with dog amenities
  • Complimentary nightly wine tasting
FromC$ 187 /nightSelect
7.5
Very good
Map
1.7 km from City Centre300 m from Yerba Buena Center For The Arts
Rooftop BarRecording StudioThe Keystone
  • Rooftop bar with sunset views
  • On-site recording studio
  • Historic Victorian-modern design
FromC$ 89 /nightSelect
8.0
Great
Map
3.0 km from City Centre1000 m from Fort Mason
Heated PoolCruiser BikesCourtyard Hammocks
  • Year-round heated outdoor pool
  • Courtyard with hammocks and firepit
  • Complimentary cruiser bikes
FromC$ 162 /nightSelect
8.3
Great
Rooftop BarHeated PatioPeloton Bikes
  • 640+ whiskeys at Dirty Habit
  • Heated outdoor patio dining
  • Donation-based pet program
FromC$ 210 /nightSelect
8.8
Great
Map
1.8 km from City Centre1000 m from Yerba Buena Center For The Arts
Valet ParkingGas FireplacesSoaking Tubs
  • Complimentary evening wine hour
  • English-style boutique decor
  • Gas fireplaces in rooms
FromC$ 206 /nightSelect
7.9
Very good
Map
1.6 km from City Centre700 m from Yerba Buena Center For The Arts
Designer BoardroomTechno GymSmart TV
  • Designer boardroom for creative meetings
  • Eco-initiatives with recycled key cards
  • Art partnerships support local nonprofits
FromC$ 155 /nightSelect
7.8
Very good
Game RoomRooftop BarWellness Studio
  • Sophisticated game room
  • Recycled-material art décor
  • Custom pet welcome items
FromC$ 159 /nightSelect
Queen AnneHotel
8.4
Great
Map
1.5 km from City Centre700 m from The Fillmore
Historic BinderFireplace Lounges24hr Coffee & Tea
  • Victorian architecture with antique decor
  • Complimentary afternoon sherry & cookies
  • Cozy fireplace lounges for relaxation
FromC$ 224 /nightSelect
7.5
Very good
Fitness CenterBusiness CenterPrivate Dining
  • Italian-inspired boutique design
  • Steps from Union Square
  • Private dining rooms available
FromC$ 127 /nightSelect
8.2
Great
Indoor PoolSpaFitness Center
  • Signature butler service
  • Evening champagne sabering
  • Complimentary house car service
FromC$ 544 /nightSelect
8.2
Great
Map
1.4 km from City Centre1000 m from Yerba Buena Center For The Arts
Pineapple BikesPineapple BistroWater Bar
  • Pineapple-themed decor throughout
  • The Naked Experience bedding
  • Complimentary afternoon pineapple treats
FromC$ 206 /nightSelect
8.9
Great
Map
2.2 km from City Centre700 m from Yerba Buena Center For The Arts
Rooftop GardenFitness CenterBusiness Center
  • First LEED-certified hotel in SF
  • Rooftop garden with city views
  • Next to Chinatown gate
FromC$ 220 /nightSelect
7.6
Very good
Map
1.9 km from City Centre800 m from Yerba Buena Center For The Arts
Event SpaceComplimentary BreakfastAccessible Rooms
  • Avant-garde art on each floor
  • Historic 1910 French colonial
  • Claw-foot tubs in premier rooms
FromC$ 226 /nightSelect
6.6
Nice
Map
900 m from City Centre600 m from Bill Graham Civic Auditorium
Heated PoolFitness CenterPet-friendly
  • Access to sister hotel's pool
  • Pet-friendly with eco-initiatives
  • Unique room configurations offered
FromC$ 138 /nightSelect
7.5
Very good
Map
1.4 km from City Centre900 m from Yerba Buena Center For The Arts
Scent BarBar EsperBusiness Centre
  • Scent bar for personalized rooms
  • Plantable postcard gift at check-in
  • Restored 1900s architecture
FromC$ 156 /nightSelect
6.7
Nice
Mini TheaterLuggage Storage24-Hour Reception
  • Cinema-themed boutique decor
  • Onsite mini movie theater
  • Pet-friendly policies available
FromC$ 132 /nightSelect
9.4
Perfect
Map
2.0 km from City Centre1.1 km from Yerba Buena Center For The Arts
Infinity PoolTreatment RoomsSteam Room
  • Indoor infinity pool at Nob Hill Spa
  • Complimentary luxury car service
  • 1930s historical decor and charm
FromC$ 329 /nightSelect
9.3
Perfect
Map
2.8 km from City Centre1.3 km from The Fillmore
Heated FloorsPillow MenuE-Bikes
  • Complimentary evening wine reception
  • Heated bathroom floors
  • Morning chauffeur service
FromC$ 305 /nightSelect
6.8
Nice
Map
1.6 km from City Centre600 m from Yerba Buena Center For The Arts
GastropubBrewery
  • Historic 1909 hotel on cable car line
  • On-site gastropub and brewery
  • Family suites with connecting rooms
FromC$ 84 /nightSelect
7.8
Very good
Map
3.1 km from City Centre400 m from San Francisco Ferry Building
Bay View SuitesPerry's RestaurantFitness Club Access
  • Embarcadero waterfront boutique hotel
  • Perry's on the Embarcadero dining
  • Select Bay Bridge panoramic views
FromC$ 152 /nightSelect
8.1
Great
Map
1.5 km from City Centre900 m from Yerba Buena Center For The Arts
Tapas RestaurantEuropean BarMeeting Room
  • Arthur Brown Jr architecture
  • Spanish tapas at BOTA
  • Evening wine reception
FromC$ 162 /nightSelect
9.1
Perfect
Map
3.4 km from City Centre100 m from Ghirardelli Square
Gourmet KitchensHouse CarValet Parking
  • Apartment-style suites with kitchens
  • Evening wine and cheese reception
  • In historic Ghirardelli Square
FromC$ 977 /nightSelect
5.9
Needs improvement
Map
1.6 km from City Centre600 m from Yerba Buena Center For The Arts
Wheelchair AccessFitness CentreRestaurant
  • 1915 Egyptian-motif mosaic murals
  • Complimentary evening wine reception
  • Steps from Union Square shops
FromC$ 191 /nightSelect
8.4
Great
Map
1.8 km from City Centre700 m from Yerba Buena Center For The Arts
Rooftop BarFitness StudioOn-site Restaurant
  • Rooftop bar with panoramic views
  • Historic landmark with modern amenities
  • Complimentary happy hour for guests
FromC$ 190 /nightSelect
7.4
Very good
Map
1.5 km from City Centre1.0 km from San Francisco City Hall
Italian BistroFitness RoomRooftop Garden
  • Complimentary wine hour nightly
  • Victorian antique furnishings
  • Rooftop garden retreat
FromC$ 92 /nightSelect
8.6
Great
Map
1.8 km from City Centre1000 m from Yerba Buena Center For The Arts
CourtyardParlorFireplace
  • Complimentary evening wine reception
  • French country-style decor
  • Gas fireplaces in rooms
FromC$ 208 /nightSelect
7.6
Very good
Map
2.1 km from City Centre600 m from Yerba Buena Center For The Arts
French BistroArt GalleryChowder House
  • Pets stay free
  • Rotating local art exhibitions
  • Steps from Chinatown's Dragon Gate
FromC$ 153 /nightSelect
7.7
Very good
Map
1.5 km from City Centre600 m from Yerba Buena Center For The Arts
Valet ParkingBoardroomFamily Rooms
  • Free valet parking with waived fees
  • CBD Intimacy Kit for romantic stays
  • Steps from Union Square & cable cars
FromC$ 170 /nightSelect
9.1
Perfect
Map
1.9 km from City Centre600 m from Yerba Buena Center For The Arts
Rooftop GymIn-room SpaMichelin Restaurant
  • Michelin-starred Cal-Indian dining
  • AAA Best of Housekeeping award
  • Sommelier-curated wine list
FromC$ 255 /nightSelect
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San Francisco's boutique hotels are concentrated in walkable districts like Union Square, Nob Hill, and the Embarcadero. These properties combine historic architecture with modern design-think restored 1909 oak doors at Palace Hotel, panoramic bay views from Four Seasons at Embarcadero, and cable car lines meeting directly outside Fairmont San Francisco. Expect amenities like indoor pools, Michelin-starred restaurants, and fitness centers, with nightly rates varying from moderate to luxury depending on season and location.

For first-time visitors, staying near Union Square puts you steps from shopping and theaters, while Embarcadero hotels offer bay views and easy BART access to the airport. Budget-conscious travelers should consider properties like Harbor Court Hotel or Parc 55, which provide boutique charm without the premium price tag. Check for deals that include breakfast or parking, and book early for summer and fall-San Francisco's peak tourist seasons.